Nextflow workflow report

[high_brenner]

Workflow execution completed successfully!
Run times
28-Mar-2025 20:14:39 - 28-Mar-2025 20:47:20 (duration: 32m 42s)
  1004 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run epi2me-labs/wf-human-variation --bam /external/data/lucy/20241107-BiomarkerProject/merged_bams --ref /external/analyses/lucy/nanopore_multiBM_pipeline/resources/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna --bed /external/analyses/lucy/nanopore_multiBM_pipeline/results/panel.bed --out_dir . --sample_name test6 --sv --snp --mod --str --phased --override_basecaller_cfg dna_r10.4.1_e8.2_400bps_hac@v4.1.0 --output_gene_summary --output_xam_fmt bam --modkit_args '--preset traditional' --bam_min_coverage 0 --threads 24 --ubam_map_threads 24 --ubam_sort_threads 24 -profile standard
CPU-Hours
8.6
Launch directory
/external/analyses/lucy/nanopore_multiBM_pipeline/results/test6/wf-humvar
Work directory
/external/analyses/lucy/nanopore_multiBM_pipeline/results/test6/wf-humvar/work
Project directory
/home/dejlu879/.nextflow/assets/epi2me-labs/wf-human-variation
Script name
main.nf
Script ID
47fb7701da21fe276a6af67405c909cb
Workflow session
55bd8151-c2b7-4a03-9190-cb1e0c4210e7
Workflow repository
https://github.com/epi2me-labs/wf-human-variation, revision master (commit hash 036d1ac08ce5abb751463e385eb9b611ac43096d)
Workflow profile
standard
Workflow container
ontresearch/wf-human-variation:sha2b856c1f358ddf1576217a336bc0e9864b6dc0ed
Container engine
docker
Nextflow version
version 23.04.4, build 5881 (25-09-2023 15:34 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)