Nextflow workflow report

[high_brenner]

Run times

28-Mar-2025 20:14:39 - 28-Mar-2025 20:47:20 (duration: 32m 42s)

  1004 succeeded  

  0 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow run epi2me-labs/wf-human-variation --bam /external/data/lucy/20241107-BiomarkerProject/merged_bams --ref /external/analyses/lucy/nanopore_multiBM_pipeline/resources/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna --bed /external/analyses/lucy/nanopore_multiBM_pipeline/results/panel.bed --out_dir . --sample_name test6 --sv --snp --mod --str --phased --override_basecaller_cfg dna_r10.4.1_e8.2_400bps_hac@v4.1.0 --output_gene_summary --output_xam_fmt bam --modkit_args '--preset traditional' --bam_min_coverage 0 --threads 24 --ubam_map_threads 24 --ubam_sort_threads 24 -profile standard

CPU-Hours

8.6

Launch directory

/external/analyses/lucy/nanopore_multiBM_pipeline/results/test6/wf-humvar

Work directory

/external/analyses/lucy/nanopore_multiBM_pipeline/results/test6/wf-humvar/work

Project directory

/home/dejlu879/.nextflow/assets/epi2me-labs/wf-human-variation

Script name

main.nf

Script ID

47fb7701da21fe276a6af67405c909cb

Workflow session

55bd8151-c2b7-4a03-9190-cb1e0c4210e7

Workflow repository

https://github.com/epi2me-labs/wf-human-variation, revision master (commit hash 036d1ac08ce5abb751463e385eb9b611ac43096d)

Workflow profile

standard

Workflow container

ontresearch/wf-human-variation:sha2b856c1f358ddf1576217a336bc0e9864b6dc0ed

Container engine

docker

Nextflow version

version 23.04.4, build 5881 (25-09-2023 15:34 UTC)